Protein ZmHMG3
ZmHMG3 is a protein in the HMG family.
Information
Coreg Name: ZmHMG3
Species: Maize
Coreg Family: HMG
Gene Name(Synonym): HMG103
Uniprot ID: C4J957
Subgenome: 2

Protein ZmHMG3

ZmHMG3 is a protein in the HMG family.

Overview of domains present in v5 transcripts
PF00505PF09011
Zm00001eb104350_T003
Zm00001eb104350_T001
Zm00001eb104350_T002
Zm00001eb104350_T004
Zm00001eb104350_T005

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d006306DAPseq no logo sequence fimo position
Zm00001d006306DAPseq no logo sequence fimo position
Zm00001d006306ChIPseq no logo sequence fimo position
Zm00001d006306PChIPseq no logo sequence fimo position

Interactions where ZmHMG3 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmHMG3 is the target  
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There are 52 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb104350_T003 from maize genome v5

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEVKANPPVPCPDSCFPLLVLLCGSQTLLVPSI

MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEVKANPPVPCPDSCFPLLVLLCGSQTLLVPSI

MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEVKANPPVPCPDSCFPLLVLLCGSQTLLVPSI

MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEVKANPPVPCPDSCFPLLVLLCGSQTLLVPSI

MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEVKANPPVPCPDSCFPLLVLLCGSQTLLVPSI

MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEVKANPPVPCPDSCFPLLVLLCGSQTLLVPSI

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF09011
PF00505
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Nucleotide Sequence
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AATCGGTTGAGTCGTTGTAATAGTA...

GRMZM2G162284_T01 from maize genome v3

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEGDE

Nucleotide Sequence
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CCCACTTTCCGTCCTTTTCCTCTCC...

GRMZM2G162284_T02 from maize genome v3


Related TFome: pUT5556

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEGDE

Nucleotide Sequence
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CCCACTTTCCGTCCTTTTCCTCTCC...

GRMZM2G162284_T03 from maize genome v3

Amino Acid Sequence
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MLLVWVVADGFIGFGSVGLEMKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIG
KAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEGDE

Nucleotide Sequence
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AAATCCCTGTGAATTCGATGCTGTT...

Zm00001d006306_T001 from maize genome v4

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQVQYVLHLLHSRCPALPRVMSDG

Nucleotide Sequence
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CTCTCCACTCGCACGTTAACGCTAC...

Zm00001d006306_T002 from maize genome v4

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEGDE

Nucleotide Sequence
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CTCTCCACTCGCACGTTAACGCTAC...

Zm00001d006306_T003 from maize genome v4

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAFLNRRRR
LPTYLRPRS

Nucleotide Sequence
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ACTCGCACGTTAACGCTACACACTC...

Zm00001d006306_T004 from maize genome v4

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEGDE

Nucleotide Sequence
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ACGTTAACGCTACACACTCCCGTTT...

Zm00001d006306_T005 from maize genome v4

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEGDE

Nucleotide Sequence
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ACTCCCGTTTACGTGCACACCTCCA...

Zm00001d006306_T006 from maize genome v4

Amino Acid Sequence
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MLLVWVVADGFIGFGSVGLEMKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIG
KAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEVKANPPVPCPDSCFPL
LVLLCGSQTLLVPSI

Nucleotide Sequence
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TCAATCAAATCCCTGTGAATTCGAT...

Zm00001d006306_T007 from maize genome v4

Amino Acid Sequence
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MLLVWVVADGFIGFGSVGLEMKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIG
KAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEGDE

Nucleotide Sequence
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TCAATCAAATCCCTGTGAATTCGAT...

Zm00001d006306_T008 from maize genome v4

Amino Acid Sequence
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MLLVWVVADGFIGFGSVGLEMKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIG
KAGGDMWKSLSDAEKAPYVSKAEKLKVEYTKKMDAYNNKQVQYVLHLLHSRCPALPRVMSDG

Nucleotide Sequence
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TCAATCAAATCCCTGTGAATTCGAT...

Zm00001eb104350_T001 from maize genome v5

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEGDE

Nucleotide Sequence
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AATCGGTTGAGTCGTTGTAATAGTA...

Zm00001eb104350_T002 from maize genome v5

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQVHLEEDPHCLVILTSPSPRSTTGTRRVMSDG

Nucleotide Sequence
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AATCGGTTGAGTCGTTGTAATAGTA...

Zm00001eb104350_T004 from maize genome v5

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEGDE

Nucleotide Sequence
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AATCGGTTGAGTCGTTGTAATAGTA...

Zm00001eb104350_T005 from maize genome v5

Amino Acid Sequence
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MKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKSLSDAEKAPYVS
KAEKLKVEYTKKMDAYNNKQSGGGPTLSGDSDKSKSEVNDGDEEGDE

Nucleotide Sequence
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TCAATCAAATCCCTGTGAATTCGAT...


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